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Version log

  • Ver 0.0.10 - 27 December

    • Parameters to use predefined protein and proteome clusters were introduced.
    • Log messages for protein mode were adjusted.
    • MMSeqs2 --max-seqs clustering parameter is now auto-adjusted for large input.

  • Ver 0.0.9 - 11 December

    • Now for dropped sequences information about duplication source is reported.
    • Config file parameter for mmseqs --max-seqs option is added.

  • Ver 0.0.8.1 - 5 November

    • Bug with LoVis4u visualisation when -ufid parameter is used was fixed.

  • Ver 0.0.8 - 4 November

    • PADLOC hmm models were added.
    • Fast mode search for protein and proteome annotation mode is introduced.
    • Updated statistics output for all modes.

  • Preprint released - 16 October, ✨

  • Ver 0.0.7.1 - 15 October 2024

    • -use-filename-as-id and --parsing-deubg parameters were added

  • Ver 0.0.7 - 15 October 2024

    • Minor bug fixes
    • Visualisation adjusment

  • Ver 0.0.6 - 30 September 2024

    • Hotspots that are located on the end of non-circular chromosomes are now treated separately.
    • -rnf, --report-not-flanked parameter is added.

  • Ver 0.0.5.1 - 5 August 2024

    • Long table file name bug is fixed (adjusment to the 0.0.5 v. update).

  • Ver 0.0.5 - 25 July 2024

    • Long pdf file name bug is fixed.

  • Ver 0.0.4 - 27 June 2024

    • Minor fixes and parameter name changes.

  • Ver 0.0.3 - 27 June 2024

    • Minor fixes.

  • Ver 0.0.2 - 13 June 2024

    • -ncg/--non-circular-genomes cmd parameter is added.
    • Minor fixes.

  • Ver 0.0.1 - 13 June 2024 - first public release.